[1] CHENG Y,GRIGORIEFF N,PENCZEK P,et al.A primer to single-particle cryo-electron microscopy[J].Cell,2015,161(3):438-449. [2] KUHLBRANDT W.The resolution revolution[J].Science,2014,343(6178):1443-1444. [3] NOGALES E.The development of cryo-EM into a mainstream structural biology technique[J].Nature Methods,2016,13(1):24-27. [4] TAN G,GUO Z,CHEN M,et al.Single-particle 3d reconstruction from cryo-electron microscopy images on GPU[C]//Proceedings of the 23rd International Conference.New York,USA:ACM Press,2009:380-389. [5] WANG K P,XU S Z,FU H H,et al.Parallelizing cryo-EM 3D reconstruction on GPU cluster with a partitioned and streamed model[C]//Proceedings of 2019 ACM International Conference on Supercomputing.New York,USA:ACM Press,2019:13-23. [6] LI L,LI X,TAN G,et al.Experience of parallelizing cryo-EM 3D reconstruction on a CPU-GPU heterogeneous system[C]//Proceedings of the 20th International Symposium on High Performance Distributed Computing.New York,USA:ACM Press,2011:195-204. [7] EL-MAHDY A,EL-SHISHINY H.An efficient load-balancing algorithm for image processing applications on multicore processors[C]//Proceedings of the 1st International Forum on Next-generation Multicore/Manycore Technologies.New York,USA:ACM Press,2008:1-5. [8] BARKER K J,CHRISOCHOIDES N P.An evaluation of a framework for the dynamic load balancing of highly adaptive and irregular parallel applications[C]//Proceedings of 2003 ACM/IEEE Conference on Supercomputing.Washington D.C.,USA:IEEE Press,2003:45. [9] FALCO I,LASKOWSKI E,OLEJNIK R,et al.Multi-objective parallel extremal optimization in processor load balancing for distributed programs[C]//Proceedings of Genetic and Evolutionary Computation Conference Companion.New York,USA:ACM Press,2017:1796-1803. [10] BOETTCHER M,AL-HASHIMI B M,EYOLE M,et al.Advanced SIMD:extending the reach of contemporary SIMD architectures[C]//Proceedings of 2014 Design,Automation and Test in Europe Conference and Exhibition.Leuven,Belgium:European Design and Automation Association,2014:1-4. [11] 王晶,张云泉,梁军.基于ARM V8平台的向量算法库实现与优化[J].计算机工程,2019,45(6):82-88. WANG J,ZHANG Y Q,LIANG J.Vector algorithm library implementation and optimization based on ARM V8 platform[J].Computer Engineering,2019,45(6):82-88.(in Chinese) [12] XIE B W,ZHAN J F,LIU X,et al.CVR:efficient vectorization of SpMV on X86 processors[C]//Proceedings of 2018 International Symposium on Code Generation and Optimization.New York,USA:ACM Press,2018:149-162. [13] 郭晨,郑烇,丁尧,等.基于动态流行度与请求代价的命名数据网络缓存策略[J].计算机工程,2018,44(2):46-50. GUO C,ZHENG Q,DING Y,et al.Cache strategy based on dynamic popularity and request cost in named data networking[J].Computer Engineering,2018,44(2):46-50.(in Chinese) [14] BRODAL G S,FAGERBERG R,JACOB R.Cache oblivious search trees via binary trees of small height[C]//Proceedings of the 13th Annual ACM-SIAM Symposium on Discrete Algorithms.New York,USA:ACM Press,2005:39-48. [15] YOON S E,LINDSTROM P,PASCUCCI V,et al.Cache-oblivious mesh layouts[C]//Proceedings of SIGGRAPH'05.New York,USA:ACM Press,2005:886-893. [16] ZHAO R,LIU G,SRINATH S,et al.Improving high-level synthesis with decoupled data structure optimization[C]//Proceedings of the 53th ACM/EDAC/IEEE Design Automation Conference.Washington D.C.,USA:IEEE Press,2016:1-6. [17] ROSIER D J,KLUG A.Reconstruction of three dimensional structures from electron micrographs[J].Nature,1968,217(5124):130-134. [18] MILNE J L S,BORGNIA M J,BARTESAGHI A,et al.Cryo-electron microscopy-a primer for the non-microscopist[J].The FEBS Journal,2013,280(1):28-45. [19] 王宏伟.冷冻电子显微学在结构生物学研究中的现状与展望[J].中国科学,2014,44(10):1020-1028. WANG H W.Current status and prospect of cryoelectron microscopy in structural biology[J].Science China,2014,44(10):1020-1028.(in Chinese) [20] 黄岚青,刘海广.冷冻电镜单颗粒技术的发展、现状与未来[J].物理,2017,46(2):91-99. HUANG L Q,LIU H G.Application of cryo-electron microscopy in structure biology:current status and future perspectives[J].Physics,2017,46(2):91-99.(in Chinese) [21] FRANK J.Single-particle imaging of macromolecules by cryo-electron microscopy[J].Annual Review of Biophysics and Biomolecular Structure,2002,31(1):303-319. |